Changelog¶
0.10.1¶
17 April 2024
General Changes¶
Add check for overlapping points in neurites (Adrien Berchet - #151)
0.10.0¶
15 April 2024
New Features¶
Merge DetectErrors and PlotErrors and add a similar FinalCheck task (Adrien Berchet - #148)
Documentation Changes¶
Add Zenodo badge on the main page (#147) (Adrien Berchet - e23e232)
0.9.4¶
12 March 2024
New Features¶
Add sign flip in Orient (Alexis Arnaudon - #144)
Fixes¶
The add_soma() function should work with no root point (Adrien Berchet - #145)
0.9.3¶
15 February 2024
Fixes¶
Use absolute paths in the dataset created by the Initialize workflow (Adrien Berchet - #142)
0.9.2¶
12 February 2024
New Features¶
Make the FixZeroDiameters, Unravel and RepairNeurites steps skippable (Adrien Berchet - #135)
Documentation Changes¶
CI Improvements¶
Add CodeCov token (Adrien Berchet - #136)
0.9.1¶
22 December 2023
New Features¶
Add nb_processes to MakeRelease and improve log level when using the CLI (Adrien Berchet - #131)
0.9.0¶
21 December 2023
Build¶
Bump MorphIO and fix tests accordingly (Adrien Berchet - #125)
New Features¶
Add logger entry to know which morphology could not be written in make_release (Adrien Berchet - #129)
Fixes¶
0.8.1¶
15 November 2023
Fixes¶
Create the dataset before the metadata to not raise a useless warning (Adrien Berchet - #120)
0.8.0¶
1 November 2023
New Features¶
Fixes¶
Chores And Housekeeping¶
Apply Copier template (Adrien Berchet - #109)
Changes to Test Assests¶
Tidying of Code eg Whitespace¶
Setup Ruff config (Adrien Berchet - #115)
0.7.0¶
22 May 2023
New Features¶
Change entry point from morphology_workflows to morphology-workflows (Adrien Berchet - #98)
Fixes¶
Compatibility with Pandas>=2 and urllib3>=2 (Adrien Berchet - #96)
Documentation Changes¶
Add link to the schema of the Repair params (Adrien Berchet - #91)
General Changes¶
0.6.1¶
27 March 2023
New Features¶
Update command and doc (Adrien Berchet - #88)
0.6.0¶
13 March 2023
New Features¶
Add helpers to create inputs (Adrien Berchet - #85)
Chores And Housekeeping¶
Bump Copier template (Adrien Berchet - #82)
CI Improvements¶
Do not export all test results as artifacts and fix dependency graphs in docs (Adrien Berchet - #84)
General Changes¶
Add propagation between workflows, fix MakeCollage and fix empty mtypes (Adrien Berchet - #83)
0.5.3¶
31 January 2023
Chores And Housekeeping¶
Add JSON schemas to ListParameters (Adrien Berchet - #79)
CI Improvements¶
Bump pre-commit hooks (Adrien Berchet - #80)
0.5.2¶
5 January 2023
Build¶
Bump Sphinx (Adrien Berchet - #77)
0.5.1¶
22 December 2022
Chores And Housekeeping¶
Use optional params for region and mtype and improve default logger (Adrien Berchet - #75)
0.5.0¶
22 December 2022
New Features¶
Placeholders can be computed without metadata.csv file (Adrien Berchet - #72)
Fixes¶
Make the rerun parameter work with CLI (Adrien Berchet - #73)
0.4.2¶
13 December 2022
Chores And Housekeeping¶
CI Improvements¶
General Changes¶
Update README.md (alex4200 - 53b70d4)
0.4.1¶
22 September 2022
Refactoring and Updates¶
CI Improvements¶
General Changes¶
0.4.0¶
11 August 2022
Chores And Housekeeping¶
Set mtype_regex argument as optional (Adrien Berchet - #52)
Documentation Changes¶
General Changes¶
CI Improvements¶
Use commitlint to check PR titles (#45) (Adrien Berchet - 4d9c3df)
0.3.2¶
1 July 2022
Improve test coverage (Adrien Berchet - #40)
Use luigi features moved from luigi-tools (Adrien Berchet - #42)
Fix task arguments in CLI and use new empty dependency graph feature of luigi-tools (Adrien Berchet - #41)
Improve MakeRelease and minor changes (Alexis Arnaudon - #11)
Constrain requirements for Jinja2 and Numpy (Adrien Berchet - #38)
0.3.1¶
17 June 2022
Ensure 0-length sections are always fixed, even if the min length is too small (Adrien Berchet - #35)
0.3.0¶
14 June 2022
Build and publish wheels (Adrien Berchet - #32)
Fix 0-length root sections in CheckNeurites task (arnaudon - #31)
Fix SSL certificate in example (Alexis Arnaudon - #23)
Fix optional imports (Adrien Berchet - #27)
Fetch morphologies workflow (Adrien Berchet - #20)
cleanup example (Alexis Arnaudon - #17)
Add link to the documentation into README.md (Adrien Berchet - #16)
Add banner to repo (alex4200 - #13)
Adding logo for Morphology-Workflows (alex4200 - #12)
Missed fix (#18) (Alexis Arnaudon - 3a9b56f)
Ensure axon stub (#26) (arnaudon - 7e7f750)
Updating copyright year (adietz - 9b662e5)
0.2.0¶
12 January 2022
Use the new input mechanism for DVF inputs (Adrien Berchet - #8)
0.1.3¶
20 December 2021
Use the SkippableMixin from DVF (Adrien Berchet - #1)
0.1.2¶
20 December 2021
Fix Pypi variable (Adrien Berchet - #3)
0.1.1¶
20 December 2021
Generate workflow images during sphinx build (Adrien Berchet - #2)
0.1.0¶
16 December 2021
Open source the Curate, Annotate and Repair workflows from the morphology-processing-workflow package (Adrien Berchet - ccd4854)