morphology_workflows.marker_helper
¶
Module to read/write/plot morphology markers.
Module Contents¶
Classes¶
Container of several markers for a single morphology. |
|
Container of a single marker. |
Attributes¶
- morphology_workflows.marker_helper.logger¶
- exception morphology_workflows.marker_helper.MarkerHelperError¶
Bases:
morphology_workflows.MorphologyWorkflowsError
Exception for Marker helpers.
- class morphology_workflows.marker_helper.MarkerSet¶
Container of several markers for a single morphology.
- classmethod from_markers(markers)¶
Load from a list of Marker object.
- static check_labels(markers)¶
Ensure label names are different.
- classmethod from_file(marker_path)¶
Load maker yaml file.
- classmethod from_dicts(markers)¶
Load marker from dict, where markers[“markers”] is a list of dict markers.
- plot(filename='markers.html', with_plotly=True, plane='3d', **kwargs)¶
Plot morphology with markers.
- to_dicts()¶
Create a list of dicts from marker class.